Software Development

AceDB

acedb.org

A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.

179 visits May 10, 2026 Details

Bielefeld University Bioinformatics Server

bibiserv.techfak.uni-bielefeld.de

BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.

391 visits Oct 24, 2025 Details

BioJava.org

biojava.org

The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.

333 visits Feb 8, 2025 Details

Bionconductor

bioconductor.org

The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference usin…

93 visits Dec 28, 2024 Details

Bioperl.org

bioperl.org

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an o…

448 visits May 13, 2026 Details

BioPHP

biophp.org

An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.

438 visits Oct 6, 2023 Details

BioPython

biopython.org

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

274 visits Feb 21, 2026 Details

BioQuery

bioquery.org

Tools that searches multiple biomedical databases from your desktop.

289 visits Jun 19, 2025 Details

BioRuby

bioruby.org

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.

184 visits May 29, 2025 Details

InterMine

intermine.org

InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.

136 visits Feb 22, 2024 Details

MolTalk

moltalk.org

Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.

183 visits Sep 25, 2025 Details

NeoBio

neobio.sourceforge.net

An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.

496 visits Jan 13, 2024 Details

Phylogenetic Analysis Library

cebl.auckland.ac.nz

PAL library is a Java toolkit for determining evolutionary trends.

56 visits May 28, 2025 Details

Sight

bioinformatics.org

Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genom…

147 visits Oct 29, 2024 Details

The Darwin Manual

inf.ethz.ch

Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary struct…

72 visits Apr 1, 2026 Details

Software Development

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