Software

ADF MAGE-ML

adfconverter.sourceforge.net

Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).

102 visits Oct 7, 2024 Details

AlmaKnowledgeServer

aks.bioalma.com

Text mining tool for genomics, proteomics platforms and drug discovery.

212 visits Jan 12, 2024 Details

AnnHyb

bioinformatics.org

Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from …

152 visits Nov 14, 2025 Details

APBioKnoppix

apbionet.org

Knoppix based bioinformatics software tools. Bootable from CD.

253 visits Jan 31, 2025 Details

ARCiB -- Accessible Retired Computers in Biology

arcib.dowling.edu

NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for softw…

351 visits Apr 12, 2024 Details

BioEdit

mbio.ncsu.edu

Free Windows biological sequence alignment editor.

217 visits Jan 3, 2024 Details

biOpen

aborygen.com

Commercial Mac OS X sequence analysis and structure visualization software.

75 visits Apr 21, 2024 Details

Darwin

cbrg.inf.ethz.ch

An interactive tool for peptide and nucleotide sequence analysis.

152 visits Jan 15, 2024 Details

DNAMAN

lynnon.com

Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.

354 visits Jan 26, 2024 Details

DNPTrapper

dnptrapper.sourceforge.net

An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.

22 visits Feb 20, 2024 Details

EMBOSS

emboss.sourceforge.net

The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.

333 visits May 3, 2025 Details

Expression Profiler

ebi.ac.uk

An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern …

444 visits Apr 21, 2025 Details

FASTA

ftp.virginia.edu

William Pearson's package for fast sequence comparison tools.

60 visits Jan 10, 2026 Details

GDE

bioafrica.net

An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, s…

430 visits May 6, 2024 Details

GeneRunner

generunner.com

A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product - now &quot;abandonware.&quot;

299 visits May 1, 2026 Details

Genespotter

genespotter.de

Commercial Windows software for analyzing biochip image data.

28 visits Nov 15, 2024 Details

Genome-tools Web Interface

sourceforge.net

Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.

133 visits Feb 16, 2024 Details

Gints

gints.free.fr

Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.

299 visits Apr 21, 2023 Details

GoCore

helsinki.fi

GoCore is an free Excel based tool for protein sequence alignment, comparisons and functional predictions in a simple, visually appealing, manner.

136 visits Sep 6, 2024 Details

HMMER

hmmer.wustl.edu

Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile …

11 visits Jun 5, 2023 Details

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