Software Development

BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing cod…

308 visits May 17, 2024 Details

Bionconductor

bioconductor.org

The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference usin…

92 visits Dec 28, 2024 Details

Bioperl.org

bioperl.org

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an o…

447 visits May 13, 2026 Details

BioPHP

biophp.org

An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.

437 visits Oct 6, 2023 Details

BioPython

biopython.org

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

273 visits Feb 21, 2026 Details

BioQuery

bioquery.org

Tools that searches multiple biomedical databases from your desktop.

288 visits Jun 19, 2025 Details

BioRuby

bioruby.org

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.

183 visits May 29, 2025 Details

Boulder.pm

broad.mit.edu

Simple but powerful data exchange language, suitable for serializing biological data objects.

177 visits Jul 13, 2024 Details

BSML

bsml.org

Bioinformation Sequence Markup Language. Extensible language specification and container for bioinformatic data.

246 visits Jan 27, 2024 Details

Dynamite

ebi.ac.uk

Code generator for writing dynamic programming programs.

298 visits Feb 28, 2026 Details

EST2uni

melogen.upv.es

A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.

444 visits Apr 27, 2024 Details

High Throughput Screening Tools

htstools.com

Analytical tools and SQL scripts that solve common problems in drug discovery.

313 visits Mar 14, 2025 Details

InterMine

intermine.org

InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.

135 visits Feb 22, 2024 Details

JCell

-ra.informatik.uni-tuebingen.de

A Java based framework to reconstruct genetic interactions from microarray data.

418 visits Jul 2, 2024 Details

MolTalk

moltalk.org

Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.

182 visits Sep 25, 2025 Details

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