https://e-sygoing.link Latest links in the Software category en-us Sun, 24 May 2026 00:49:19 -0400 https://e-sygoing.link/link/5252371-x-plor-archives Forum for 3D macromolecular structure determination. Includes links to other Biosci/Bionet newsgroups, maintained at Indiana University, Bloomington. Mon, 06 Oct 2025 14:56:23 -0400 https://e-sygoing.link/go/5252371 https://e-sygoing.link/link/5252379-autodock A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. Wed, 02 Jul 2025 22:07:54 -0400 https://e-sygoing.link/go/5252379 https://e-sygoing.link/link/5252378-b-on-line-molecular-modeling "B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/RNA), polypeptides, polysaccharides, the AMBER force field, geometry optimization, simulated annealing. Exports jpeg, gif, and ppm images. Fri, 21 Mar 2025 03:15:29 -0400 https://e-sygoing.link/go/5252378 https://e-sygoing.link/link/5252396-jay-ponder-lab Graphical user interface to suites of molecular modeling tools, providing an integrated environment for engineering applications. Contacts for the group at Washington University School of Medicine in Saint Louis, Missouri. Sat, 01 Mar 2025 01:40:44 -0500 https://e-sygoing.link/go/5252396 https://e-sygoing.link/link/5252383-yasara (Yet Another Scientific Artificial Reality Application) is an interactive real-time molecular dynamics program. Fri, 01 Nov 2024 09:42:27 -0400 https://e-sygoing.link/go/5252383 https://e-sygoing.link/link/5252390-pdb-viewer Downloads for Windows and Linux, to visualize three dimensional structure of macromolecules, using protein data bank format for atom coordinates, from ex-student at University of Manchester, England. Fri, 19 Apr 2024 08:47:45 -0400 https://e-sygoing.link/go/5252390 https://e-sygoing.link/link/5252392-southwest-biotechnology-and-informatics-center Sequence analysis tools including protein classification with the assistance of predicted secondary structure and sequence format tools, available under license from New Mexico State University. Sun, 11 Feb 2024 18:29:17 -0500 https://e-sygoing.link/go/5252392 https://e-sygoing.link/link/5252380-tinker A free molecular modeling package for molecular mechanics and dynamics, with some special features for biopolymers. Distributed as source code and as binaries for Windows9x, Linux and Mac. Sun, 30 Apr 2023 12:26:55 -0400 https://e-sygoing.link/go/5252380 https://e-sygoing.link/link/5252400-zmm-software-inc Modeling tool for theoretical studies, employing molecular mechanics approach in combination with Monte Carlo energy minimization algorithm. Downloads on secure server, and contacts in Flamborough, Ontario. Fri, 24 Feb 2023 06:30:29 -0500 https://e-sygoing.link/go/5252400