Visualization

Biodesigner and iMol

pirx.com

A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for academic use. Additionaly the iMol molecule viewer is available for Mac OS X systems.

227 visits Dec 1, 2024 Details

ChemCraft

chemcraftprog.com

Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced by the GAMESS a…

198 visits Nov 27, 2024 Details

Historical Molecular Graphics

umass.edu

Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.

309 visits Nov 3, 2024 Details

JIMP - The Interactive Molecule Program

chem.tamu.edu

Program for Linux and Windows for viewing and manipulating 3D structures of molecules and orbitals. Renders publication quality images and performs Fenske-Hall SCF calculations.

461 visits Apr 14, 2026 Details

Jmol

jmol.sourceforge.net

Open source molecule viewer written in Java. It runs as a standalone application and as a web browser applet.

51 visits Sep 29, 2024 Details

Nanotube Modeler

jcrystal.com

A program for generating and visualizing the xyz-coordinates for nanotubes, nanocones, nanosheets, and fullerenes. For Windows; free demo version available.

120 visits Sep 7, 2024 Details

PovChem

chemicalgraphics.com

A chemical visualization and illustration program. Reads PDB files and exports POV-Ray files for producing high-resolution ray-traced images. Available for Windows, Linux, Mac, and…

233 visits Oct 16, 2025 Details

Protein Explorer

umass.edu

A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime plugin, which is only available for Windows9x.

32 visits Aug 30, 2025 Details

PyMOL

pymol.org

A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences.

483 visits Aug 3, 2025 Details

PyMolWiki

pymolwiki.org

User-contributed wiki to supplement the PyMOL documentation.

251 visits Jul 3, 2025 Details

RasMol

umass.edu

Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for Windows, Macintosh, and UNIX.

17 visits Dec 2, 2023 Details

SweetMollyGrace

rodomontano.altervista.org

A suite of freeware tools for automating work of rendering and animating molecules. Generates high quality images of molecules from PDB, XYZ, or molfiles using raytracing tools (Po…

423 visits Jun 10, 2025 Details

Swiss-PdbViewer

expasy.org

A free program for viewing and analyzing several proteins at the same time. Some energy minimzation and homology modeling features are also included.

367 visits Apr 16, 2023 Details

UCSF Chimera

cgl.ucsf.edu

Highly extensible, interactive molecular graphics program. It is the successor to UCSF Midas and MidasPlus. Free of charge for academic, government, non-profit, and personal use.

117 visits Mar 8, 2025 Details

Viewmol

viewmol.sourceforge.net

An open-source graphical front end for computational chemistry programs such as Gaussian, Gamess, and Mopac. Available for Linux, FreeBSD, Mac OS X, and other Unices.

390 visits Sep 3, 2025 Details

VMD

ks.uiuc.edu

A free program for visualization and analysis of biological systems such as proteins, nucleic acids, and lipid bilayer assemblies.

73 visits Apr 25, 2026 Details

Visualization

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