Visualization

Biodesigner and iMol

pirx.com

A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for academic use. Additionaly the iMol molecule viewer is available for Mac OS X systems.

226 visits Dec 1, 2024 Details

ChemCraft

chemcraftprog.com

Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced by the GAMESS a…

197 visits Nov 27, 2024 Details

Dino

bioz.unibas.ch

A free 3D visualization program for structural biology data with emphasis on analyzing surface or electron density properties. Output can be written as PNG, PostScript or POV-Ray. …

11 visits Jan 31, 2024 Details

DTMM

polyhedron.co.uk

Desktop Molecular Modeller: A simple program for constructing and viewing small molecules and proteins in 3D with some energy calculation/minimization capabilities. Run on any PC w…

31 visits Oct 5, 2025 Details

Facio

1.bbiq.jp

3D-Molecular Modeling Software, available at no charge for the Windows platform. Has functions for visualization of biomolecules and results from GAMESS QM calculations, and for al…

380 visits Mar 25, 2024 Details

gOpenMol

csc.fi

A free program for the analysis of molecular dynamics trajectories and the display of molecular orbitals, electron densities and electrostatic potentials. Supports many file format…

369 visits Jan 20, 2024 Details

Grasp

honiglab.cpmc.columbia.edu

A visualization and analysis program useful for the display and manipulation of the surfaces of molecules and their electrostatic properties. Commercial software.

388 visits Apr 12, 2026 Details

Historical Molecular Graphics

umass.edu

Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.

308 visits Nov 3, 2024 Details

JIMP - The Interactive Molecule Program

chem.tamu.edu

Program for Linux and Windows for viewing and manipulating 3D structures of molecules and orbitals. Renders publication quality images and performs Fenske-Hall SCF calculations.

460 visits Apr 14, 2026 Details

Jmol

jmol.sourceforge.net

Open source molecule viewer written in Java. It runs as a standalone application and as a web browser applet.

50 visits Sep 29, 2024 Details

Labquip

labquip.clara.net

Plastic molecular models for constructing polypeptides and DNA molecules.

33 visits Jul 8, 2025 Details

Molcular Model Kits

hgs-model.com

Plastic molecular structure models for research and education in science, intended especially for biochemistry.

223 visits Feb 19, 2026 Details

Molda

molda.org

A molecular model building program for displaying data from MM2, MOPAC, Gaussian94, charmm and amber4 outputs. Supported on most windows, mac and unix platforms.

84 visits Mar 5, 2025 Details

MOLDEN

cmbi.ru.nl

Pre- and post-processing program for molecular and electronic structure, with Z-matrix editor, electron density visualization, and molecule animations. Available for Unix and VMS; …

410 visits Nov 20, 2025 Details

MOLMOL

hugin.ethz.ch

A free program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with emphasis on structures determined by NMR. Runs on UNIX…

290 visits Mar 13, 2026 Details

Molymod Molecular Models

molecular-model.com

Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix), semiconductors and crystal lattice structures.

195 visits Oct 19, 2025 Details

Nanotube Modeler

jcrystal.com

A program for generating and visualizing the xyz-coordinates for nanotubes, nanocones, nanosheets, and fullerenes. For Windows; free demo version available.

119 visits Sep 7, 2024 Details

OpenRasMol

openrasmol.org

Provided for the convenience of users and software developers of open source versions of RasMol.

294 visits Apr 27, 2026 Details

OpenScience

openscience.org

A directory of links to free molecule viewers and editors.

280 visits Jan 11, 2024 Details

PovChem

chemicalgraphics.com

A chemical visualization and illustration program. Reads PDB files and exports POV-Ray files for producing high-resolution ray-traced images. Available for Windows, Linux, Mac, and…

232 visits Oct 16, 2025 Details

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