Protein Analysis

3D-JIGSAW

bmm.icnet.uk

Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.

80 visits Aug 15, 2024 Details

3D-PSSM Fold Recognition

sbg.bio.ic.ac.uk

Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.

204 visits Apr 19, 2026 Details

Betapred

imtech.res.in

Prediction of beta turns and their types using statistical algorithms. 5 different methods including Chou-Fasman, Thornton's PRs, Gorbturn, and a consensus of all methods.

12 visits Nov 15, 2023 Details

BioInfoBank Meta Server

bioinfo.pl

The BioInfoBank Meta Server offers a gateway to well-benchmarked protein structure and function prediction methods. Structural models collected from the predictions servers are ass…

405 visits Feb 15, 2026 Details

COLORADO3D

asia.genesilico.pl

Service to aid visualisation of potential errors in protein structures. Free for academic users.

471 visits Apr 12, 2026 Details

Combinatorial Extension of Polypeptides

cl.sdsc.edu

Method for finding 3-D similarities in protein structures from the UCSD Supercomputer Center.

442 visits Sep 15, 2024 Details

ConSurf

consurf.tau.ac.il

Identifies functionally important regions on the surface of a protein or domain, of known three-dimensional (3D) structure using the phylogenetic relations between close sequence h…

42 visits Jun 30, 2024 Details

Dali server

ebi.ac.uk

The Dali server is a network service for comparing protein structures in 3D.

165 visits Nov 25, 2025 Details

DisEMBL

dis.embl.de

Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.

161 visits Jul 14, 2024 Details

ELM - Functional Sites in Proteins

elm.eu.org

Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters …

221 visits Mar 17, 2026 Details

EMBL Bioinformatic Harvester

harvester.embl.de

Collection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserve…

72 visits Feb 4, 2024 Details

Entelechon Backtranslation tool

entelechon.com

Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if …

344 visits Mar 22, 2024 Details

ESyPred3D

fundp.ac.be

ESyPred3D is an automated homology modeling program getting benefit of the increased alignment performances of a new alignment strategy using neural networks. The final three dimen…

481 visits Sep 13, 2024 Details

iMolTalk

i.moltalk.org

Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.

449 visits Feb 13, 2026 Details

InterPro - The Integrated Resource of Protein Domains and Functional Sites.

ebi.ac.uk

A database built from Pfam, PRINTS and PROSITE.

271 visits Apr 23, 2024 Details

JAligner

jaligner.sourceforge.net

Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.

127 visits Oct 21, 2025 Details

Jpred

compbio.dundee.ac.uk

Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.

99 visits Dec 7, 2024 Details

Melanie II 2-D Analysis Software

au.expasy.org

Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.

429 visits Sep 1, 2025 Details

MODBASE

salilab.org

A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites, SNP …

417 visits Apr 28, 2025 Details

Molecular Biology Tools Online

mbt.biobitfield.com

Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature alon…

15 visits Aug 18, 2025 Details

Category Info