Homology Detection

BLAST

ncbi.nlm.nih.gov

NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.

42 visits Jun 21, 2025 Details

ESPript

prodes.toulouse.inra.fr

Formating of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry.

85 visits Apr 23, 2025 Details

GeneMatcher

ch.embnet.org

Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.

181 visits Mar 17, 2023 Details

GeneStream II

xylian.igh.cnrs.fr

Sequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR.

54 visits Jul 21, 2024 Details

GWBLAST

imtech.res.in

Genome-Wide BLAST search for similarity searching against genes or proteins. Integrated with multiple alignments and phylogenetic tree capabilities.

42 visits Apr 12, 2026 Details

HMM library for all proteins of known structure

supfam.mrc-lmb.cam.ac.uk

This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assi…

127 visits Oct 17, 2025 Details

Interactive Blast Query

aridolan.com

Utility for online manipulation of Blast results. Results organized in a table format.

143 visits May 12, 2024 Details

Meta-MEME

metameme.sdsc.edu

Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.

345 visits Nov 20, 2025 Details

Sequence Alignment and Modeling System

cse.ucsc.edu

Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.

105 visits Feb 23, 2025 Details

The ISREC Group Servers

isrec.isb-sib.ch

Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Rese…

94 visits Feb 12, 2024 Details

WU-BLAST Archives

blast.wustl.edu

Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.

175 visits Aug 27, 2025 Details

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