Software

ADF MAGE-ML

adfconverter.sourceforge.net

Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).

103 visits Oct 7, 2024 Details

AnnHyb

bioinformatics.org

Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from …

153 visits Nov 14, 2025 Details

APBioKnoppix

apbionet.org

Knoppix based bioinformatics software tools. Bootable from CD.

254 visits Jan 31, 2025 Details

biOpen

aborygen.com

Commercial Mac OS X sequence analysis and structure visualization software.

76 visits Apr 21, 2024 Details

DNAMAN

lynnon.com

Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.

355 visits Jan 26, 2024 Details

DNPTrapper

dnptrapper.sourceforge.net

An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.

23 visits Feb 20, 2024 Details

EMBOSS

emboss.sourceforge.net

The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.

334 visits May 3, 2025 Details

GeneRunner

generunner.com

A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware."

300 visits May 1, 2026 Details

Genespotter

genespotter.de

Commercial Windows software for analyzing biochip image data.

29 visits Nov 15, 2024 Details

Genome-tools Web Interface

sourceforge.net

Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.

134 visits Feb 16, 2024 Details

Gints

gints.free.fr

Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.

300 visits Apr 21, 2023 Details

JAligner

jaligner.sourceforge.net

Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.

32 visits May 6, 2025 Details

limmaGUI

bioinf.wehi.edu.au

A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.

300 visits Apr 30, 2024 Details

MAFFT

biophys.kyoto-u.ac.jp

Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies.

386 visits May 28, 2025 Details

MaGe (Magnifying Genomes) - Microbial genome Annotation System

genoscope.cns.fr

The MaGe system offers a set of graphical interfaces which allow biologist to perform relevant expert annotation of microbial genomes.

62 visits Jun 20, 2025 Details

NCBI BLAST

ncbi.nlm.nih.gov

BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is prot…

41 visits Mar 11, 2026 Details

pDRAW32

acaclone.com

Freeware DNA cloning, analysis and visualization software.

354 visits Jan 9, 2026 Details

Phrap/Consed

phrap.org

DNA sequence assembler and finishing tools from the UW Genome Center.

427 visits Nov 3, 2025 Details

Premier Biosoft International

PremierBiosoft.com

Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, …

100 visits Feb 5, 2026 Details

RGBG Analyzer

immunokin.com

Commercial software to analyses the red, green, blue, and gray color values of user-selected areas of images in gif, tiff, bmp, jpeg format. Windows 2000 & XP.

56 visits Jan 19, 2025 Details

Software

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